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  • Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.

Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.

The Journal of cell biology (2015-08-19)
Sven Hennig, Geraldine Kong, Taro Mannen, Agata Sadowska, Simon Kobelke, Amanda Blythe, Gavin J Knott, K Swaminathan Iyer, Diwei Ho, Estella A Newcombe, Kana Hosoki, Naoki Goshima, Tetsuya Kawaguchi, Danny Hatters, Laura Trinkle-Mulcahy, Tetsuro Hirose, Charles S Bond, Archa H Fox
초록

Prion-like domains (PLDs) are low complexity sequences found in RNA binding proteins associated with the neurodegenerative disorder amyotrophic lateral sclerosis. Recently, PLDs have been implicated in mediating gene regulation via liquid-phase transitions that drive ribonucleoprotein granule assembly. In this paper, we report many PLDs in proteins associated with paraspeckles, subnuclear bodies that form around long noncoding RNA. We mapped the interactome network of paraspeckle proteins, finding enrichment of PLDs. We show that one protein, RBM14, connects key paraspeckle subcomplexes via interactions mediated by its PLD. We further show that the RBM14 PLD, as well as the PLD of another essential paraspeckle protein, FUS, is required to rescue paraspeckle formation in cells in which their endogenous counterpart has been knocked down. Similar to FUS, the RBM14 PLD also forms hydrogels with amyloid-like properties. These results suggest a role for PLD-mediated liquid-phase transitions in paraspeckle formation, highlighting this nuclear body as an excellent model system for understanding the perturbation of such processes in neurodegeneration.

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SAFC
Sodium deoxycholate
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MISSION® esiRNA, targeting mouse Rbm14
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Imidazole buffer Solution, BioUltra, 1 M in H2O
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Sodium dodecyl sulfate solution, BioUltra, for molecular biology, 20% in H2O
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Ethylenediaminetetraacetic acid, 99.995% trace metals basis
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Fluorescein, for fluorescence, free acid
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Ethylenediaminetetraacetic acid, anhydrous, BioUltra, ≥99% (titration)
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Ethylenediaminetetraacetic acid, purified grade, ≥98.5%, powder
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Ethylenediaminetetraacetic acid, anhydrous, crystalline, BioReagent, suitable for cell culture
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Sodium dodecyl sulfate solution, BioUltra, for molecular biology, 10% in H2O
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Ethylenediaminetetraacetic acid solution, 0.02% in DPBS (0.5 mM), sterile-filtered, BioReagent, suitable for cell culture
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Sodium deoxycholate, ≥97% (titration)
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Ethylenediaminetetraacetic acid, ACS reagent, 99.4-100.6%, powder
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Sodium deoxycholate, BioXtra, ≥98.0% (dry matter, NT)
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DAPI, for nucleic acid staining
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MISSION® esiRNA, targeting human RBM4, RBM14-RBM4
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MISSION® esiRNA, targeting mouse Fus
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DL-Dithiothreitol solution, 1 M in H2O
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Sodium chloride solution, 5 M
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Sodium dodecyl sulfate, dust-free pellets, suitable for electrophoresis, for molecular biology, ≥99.0% (GC)
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Imidazole, anhydrous, free-flowing, Redi-Dri, ACS reagent, ≥99%
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Imidazole, ReagentPlus®, 99%
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Sodium chloride, 99.999% trace metals basis
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Sodium chloride, BioPerformance Certified, ≥99% (titration), suitable for insect cell culture, suitable for plant cell culture
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Imidazole, for molecular biology, ≥99% (titration), free-flowing, Redi-Dri
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Sodium dodecyl sulfate, BioReagent, suitable for electrophoresis, for molecular biology, ≥98.5% (GC), free-flowing, Redi-Dri
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Sodium chloride, AnhydroBeads, −10 mesh, 99.999% trace metals basis
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Sodium chloride-35Cl, 99 atom % 35Cl
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Sodium chloride, random crystals, optical grade, 99.9% trace metals basis
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Sodium dodecyl sulfate, ACS reagent, ≥99.0%