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M046030

Sigma-Aldrich

Cyanine 5 Phosphoramidite

configured for ABI ÄKTA® and OligoPilot®

Synonym(s):

2-[5-[1,3-Dihydro-1-[3-(4-methoxytriphenylmethoxy)propyl]-3,3-dimethyl-2H-indol-2-ylidene]-1,3-pentadien-1-yl]-1-[3-[N,N-diisopropylamino(2-cyanoethoxy)phosphinoxy]propyl]-3,3-dimethyl-3H-indolium

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About This Item

Empirical Formula (Hill Notation):
C60H72N4O4P
CAS Number:
351186-76-0
Molecular Weight:
944.21
UNSPSC Code:
41116105
PubChem Substance ID:
329817793
NACRES:
NA.21

product line

Proligo Reagents

Assay

≥90% (31P-NMR)
≥95.0% (reversed phase HPLC)

form

solid

mol wt

944.21 g/mol

color

clear blue0.1M in Acetonitrile

solubility

acetonitrile: 0.1 M, clear, blue

compatibility

configured for ABI ÄKTA® and OligoPilot®

shipped in

dry ice

storage temp.

−20°C

SMILES string

CC(C1=C(N/2CCCOP(N(C(C)C)C(C)C)OCCC#N)C=CC=C1)(C)C2=C\C=C\C=C\C(C3(C)C)=[N+](CCCOC(C4=CC=CC=C4)(C5=CC=C(OC)C=C5)C6=CC=CC=C6)C7=C3C=CC=C7.[Cl-]

InChI

1S/C60H72N4O4P.ClH/c1-46(2)64(47(3)4)69(67-44-23-40-61)68-45-25-42-63-55-33-22-20-31-53(55)59(7,8)57(63)35-18-12-17-34-56-58(5,6)52-30-19-21-32-54(52)62(56)41-24-43-66-60(48-26-13-10-14-27-48,49-28-15-11-16-29-49)50-36-38-51(65-9)39-37-50;/h10-22,26-39,46-47H,23-25,41-45H2,1-9H3;1H/q+1;/p-1

InChI key

GWCNEDQILVVBDJ-UHFFFAOYSA-M

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General description

Phosphoramidite technology is ideally suited for the modification ofsynthetic oligonucleotides with covalently attached reporter moieties,linkers, spacers, or haptens. Sigma-Aldrich provides popular reporters andlinkers ready to use for DNA/RNA synthesis machines such as β-cyanoethylphosphoramidites. Cyanine 5 Phosphoramidite is one such label whose absorbance maxima is 646 nm and emission maxima is 662nm.Cyanine 5 Phosphoramidite is configured for ABI™ Synthesizers.

Legal Information

ABI is a trademark of Applera Corporation or its subsidiaries in the US and/or certain other countries
OligoPilot is a registered trademark of Cytiva
ÄKTA is a registered trademark of Cytiva

Storage Class Code

11 - Combustible Solids

WGK

WGK 3

Flash Point(F)

Not applicable

Flash Point(C)

Not applicable

Certificates of Analysis (COA)

Search for Certificates of Analysis (COA) by entering the products Lot/Batch Number. Lot and Batch Numbers can be found on a product’s label following the words ‘Lot’ or ‘Batch’.

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